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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
269
ChIP-seq
247
total RNA-seq
187
single cell RNA-seq
47
WGBS
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
Assay category
436
Transcription
DNA accessibility
269
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
35
control
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
193
May, 2021
76
February, 2023
74
May, 2022
59
September, 2018
56
September, 2020
52
August, 2017
48
July, 2018
47
May, 2020
43
April, 2018
31
July, 2019
27
June, 2019
27
October, 2019
20
February, 2021
6
November, 2017
5
December, 2019
4
August, 2021
4
May, 2019
4
November, 2020
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
495
bigWig
485
bam
344
fastq
258
tsv
216
bed narrowPeak
100
tagAlign
93
zippedFastqFolder
47
bigBed narrowPeak
16
bed broadPeak
16
bigBed broadPeak
10
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
Organism
790
Homo sapiens
Biosample type
2279
tissue
790
primary cell
566
cell line
340
in vitro differentiated cells
10
stem cell
Organ
310
epithelium
275
pancreas
30
connective tissue
28
vasculature
25
blood vessel
22
kidney
19
vein
13
brain
13
musculature of body
11
liver
9
heart
3
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
366
AMP
227
HPAP
196
T1D
1
ITG
Genome assembly (visualization)
511
hg19
451
GRCh38
Lab
331
AMP-T2D consortium
231
Kyle Gaulton, UCSD
227
Klaus Kaestner, Upenn
1
ITG
Audit category:
36
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA accessibility
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
790 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
primary cell
monocyte
85
54
1
1
pancreatic alpha cell
13
52
12
31
1
Langerhans cell
85
pancreatic beta cell
13
21
12
16
1
exocrine cell
39
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