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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
ChIP-seq
Assay category
38
DNA binding
DNA accessibility
Target of assay
25
histone
25
histone modification
15
broad histone mark
13
transcription factor
10
narrow histone mark
2
RNA binding protein
Date released
21
August, 2017
15
November, 2017
2
October, 2019
Available data
361
bam
357
fastq
186
tsv
157
txt
152
tagAlign
147
bigWig
108
bed narrowPeak
93
zippedFastqFolder
38
bed broadPeak
34
bigBed narrowPeak
23
bedpe bed3+
22
hic
19
bed bedMethyl
19
bigBed bedMethyl
17
bigBed broadPeak
10
bed bed3+
8
csv
4
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
vcf
Organism
38
Homo sapiens
Biosample type
21
tissue
14
cell line
3
primary cell
Organ
14
liver
13
musculature of body
6
pancreas
2
blood vessel
2
epithelium
2
vasculature
2
vein
1
adipose tissue
1
brain
1
connective tissue
Project
38
AMP
Genome assembly (visualization)
114
hg19
GRCh38
Lab
38
AMP-T2D consortium
Audit category:
2
inconsistent control read length
assay_slims!
DNA accessibility
target.investigated_as!
recombinant protein
assembly!
GRCh38
BIOSAMPLE
ASSAY
38 results
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ChIP-seq
tissue
skeletal muscle tissue
13
islet of Langerhans
6
cingulate gyrus
1
subcutaneous abdominal adipose tissue
1
cell line
HepG2
14
primary cell
endothelial cell of umbilical vein
2
skeletal muscle myoblast
1
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