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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
71
ChIP-seq
8
WGBS
4
total RNA-seq
3
pCHi-C
Assay category
97
Transcription
71
DNA binding
DNA accessibility
8
DNA methylation
Target of assay
35
histone
35
histone modification
31
control
20
broad histone mark
15
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
92
August, 2021
40
May, 2024
11
October, 2019
10
April, 2019
8
July, 2019
6
May, 2019
4
February, 2020
3
March, 2020
2
February, 2021
2
June, 2019
1
February, 2023
Available data
99
tsv
46
bigWig
40
bed narrowPeak
37
bam
6
bed bedMethyl
6
bigBed bedMethyl
2
tagAlign
Organism
179
Homo sapiens
Biosample type
175
tissue
2
cell line
2
primary cell
Organ
194
pancreas
167
heart
161
liver
140
epithelium
135
kidney
109
brain
94
connective tissue
89
bone element
65
adipose tissue
35
blood vessel
35
vasculature
26
eye
26
limb
23
musculature of body
13
artery
12
nerve
11
spleen
10
lung
8
embryo
6
blood
6
bodily fluid
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
179
AMP
Genome assembly (visualization)
217
GRCh38
hg19
Lab
139
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
1
inconsistent ontology term
assay_slims!
DNA accessibility
target.investigated_as!
recombinant protein
assembly!
hg19
BIOSAMPLE
ASSAY
179 results
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single cell RNA-seq
ChIP-seq
WGBS
total RNA-seq
pCHi-C
tissue
left cardiac atrium
18
40
heart left ventricle
18
6
4
1
heart right ventricle
17
2
2
1
right cardiac atrium
18
1
1
1
tibial nerve
11
1
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cell line
smooth muscle cell of the coronary artery
2
primary cell
cardiac fibroblast
2
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