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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
902
total RNA-seq
590
ChIP-seq
16
WGBS
16
small RNA-seq
Assay category
918
Transcription
590
DNA binding
DNA accessibility
16
DNA methylation
Target of assay
494
histone modification
493
histone
251
narrow histone mark
242
broad histone mark
93
transcription factor
27
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
444
February, 2021
162
May, 2020
155
August, 2017
155
October, 2019
116
July, 2018
92
May, 2019
64
April, 2019
57
November, 2017
55
July, 2019
45
October, 2018
40
May, 2024
38
May, 2021
36
December, 2017
19
November, 2019
13
November, 2018
9
March, 2020
6
April, 2018
6
January, 2019
6
October, 2017
3
December, 2018
2
September, 2017
1
May, 2023
Available data
1517
bigWig
1481
bam
917
tsv
564
bed narrowPeak
376
bigBed narrowPeak
260
fastq
116
tagAlign
28
bed bed3+
16
bed bedMethyl
16
bigBed bedMethyl
14
bed broadPeak
1
tagAlign bed3+
Organism
1518
Homo sapiens
Biosample type
1524
tissue
460
primary cell
364
cell line
247
in vitro differentiated cells
3
stem cell
Organ
475
connective tissue
417
adipose tissue
353
pancreas
234
liver
174
brain
125
heart
62
blood vessel
62
vasculature
58
bone element
52
limb
28
nerve
22
kidney
21
artery
14
spleen
10
musculature of body
1
pituitary gland
Project
1522
AMP
2
T1D
Genome assembly (visualization)
1524
GRCh38
1467
hg19
Lab
1484
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA accessibility
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
1524 results
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total RNA-seq
ChIP-seq
WGBS
small RNA-seq
tissue
adipose tissue
382
1
2
islet of Langerhans
266
25
liver
147
75
1
bone tissue
58
left cardiac atrium
40
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