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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
474
total RNA-seq
25
ATAC-seq
9
DNase-seq
5
pCHi-C
4
single cell RNA-seq
3
small RNA-seq
2
Capture-C
1
Hi-C
1
RNA microarray
Assay category
481
Transcription
DNA binding
34
DNA accessibility
DNA methylation
1
3D chromatin structure
Date released
455
February, 2021
17
July, 2019
14
February, 2023
6
June, 2019
6
November, 2020
5
August, 2021
3
October, 2019
2
April, 2018
2
August, 2017
2
February, 2020
2
July, 2018
2
March, 2020
2
May, 2021
1
August, 2018
1
January, 2018
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
493
bigWig
489
bam
478
tsv
17
bed narrowPeak
16
bed bed3+
13
bigBed narrowPeak
9
bed broadPeak
9
bigBed broadPeak
8
fastq
6
bed bed3
4
bed bedgraph
1
bedpe bed3+
1
hdf5
Organism
523
Homo sapiens
Biosample type
467
tissue
30
in vitro differentiated cells
26
primary cell
1
stem cell
Organ
675
pancreas
524
connective tissue
412
adipose tissue
342
epithelium
298
kidney
249
heart
232
liver
159
bone element
131
vasculature
129
blood vessel
107
artery
66
brain
55
eye
55
limb
51
musculature of body
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
vein
3
spleen
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
523
AMP
1
T1D
Genome assembly (visualization)
512
hg19
489
GRCh38
Lab
519
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
7
inconsistent ontology term
assay_slims!
DNA binding
DNA methylation
BIOSAMPLE
ASSAY
524 results
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total RNA-seq
ATAC-seq
DNase-seq
pCHi-C
single cell RNA-seq
small RNA-seq
Capture-C
Hi-C
RNA microarray
tissue
adipose tissue
382
3
1
bone tissue
58
subcutaneous adipose tissue
7
1
1
1
omental fat pad
5
1
2
1
visceral abdominal adipose tissue
3
+ See 1 more…
in vitro differentiated cells
adipocyte
5
8
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
+ See 2 more…
primary cell
osteoblast
5
2
1
1
pancreatic stellate cell
4
cardiac fibroblast
3
brain pericyte
1
1
mesenchymal stem cell of adipose
1
1
+ See 6 more…
stem cell
mesenchymal stem cell
1
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