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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1227
Transcription
DNA binding
210
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
537
February, 2021
165
August, 2021
163
June, 2019
143
May, 2020
120
July, 2018
106
August, 2017
71
July, 2019
47
September, 2023
40
May, 2021
36
March, 2020
31
October, 2019
28
May, 2022
25
February, 2020
20
November, 2019
19
April, 2020
16
February, 2023
16
November, 2018
8
January, 2021
6
April, 2018
4
May, 2023
4
November, 2020
3
December, 2019
1
August, 2022
1
March, 2019
Available data
1121
bam
1114
bigWig
1075
tsv
181
bed narrowPeak
181
bigBed narrowPeak
177
bed bed3+
176
bed broadPeak
176
bigBed broadPeak
157
txt
128
fastq
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
Organism
1608
Homo sapiens
Biosample type
1610
tissue
609
primary cell
154
in vitro differentiated cells
149
cell line
7
stem cell
Organ
467
connective tissue
409
adipose tissue
326
pancreas
197
kidney
185
liver
151
heart
146
bone element
52
brain
52
musculature of body
48
limb
26
eye
22
blood vessel
22
vasculature
20
lung
18
ureter
8
artery
7
nerve
4
skeleton
4
spleen
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1526
AMP
47
KPMP
19
LungMap
18
T1D
Genome assembly (visualization)
1111
GRCh38
1104
hg19
Lab
1427
AMP-T2D consortium
67
Katalin Susztak, Upenn
47
KPMP
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
88
inconsistent ontology term
9
audit script error
assay_slims!
DNA binding
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
1610 results
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total RNA-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
3
1
islet of Langerhans
298
1
7
4
3
1
1
4
liver
167
2
1
3
1
1
1
1
kidney
49
13
64
6
1
1
1
bone element
84
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