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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
189
total RNA-seq
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
DNA binding
193
Transcription
7
DNA methylation
6
DNA accessibility
4
3D chromatin structure
1
DNA sequencing
Date released
144
May, 2020
20
May, 2022
13
August, 2021
10
July, 2019
5
August, 2017
5
December, 2019
5
January, 2019
4
November, 2018
3
March, 2020
2
February, 2021
2
June, 2019
1
December, 2018
1
February, 2020
1
October, 2019
Available data
174
tsv
169
bigWig
168
bam
12
fastq
7
bed bed3+
5
bed broadPeak
5
bed narrowPeak
5
bigBed broadPeak
5
bigBed narrowPeak
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
csv
1
hdf5
1
vcf
Organism
216
Homo sapiens
Biosample type
185
tissue
22
cell line
9
primary cell
Organ
576
pancreas
506
connective tissue
412
adipose tissue
292
epithelium
227
kidney
216
liver
212
heart
147
bone element
88
vasculature
85
blood vessel
64
brain
62
artery
56
musculature of body
48
limb
28
eye
20
lung
18
ureter
15
embryo
8
blood
8
bodily fluid
7
nerve
5
vein
4
skeleton
4
spleen
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
216
AMP
Genome assembly (visualization)
173
hg19
168
GRCh38
Lab
183
AMP-T2D consortium
20
Karen Mohlke, UNC
13
Bing Ren, UCSD
assay_slims!
DNA binding
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
216 results
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total RNA-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
2
3
1
1
1
1
1
right lobe of liver
3
2
1
2
cell line
HepG2
14
1
2
2
2
1
primary cell
hepatocyte
5
1
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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