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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
62
total RNA-seq
ATAC-seq
2
DNase-seq
2
Hi-C
1
FAIRE-seq
1
pCHi-C
Assay category
62
Transcription
DNA binding
3
DNA accessibility
2
3D chromatin structure
Date released
142
February, 2021
4
February, 2023
4
October, 2019
1
March, 2020
1
May, 2021
Available data
88
txt
61
bam
61
bigWig
58
tsv
3
bed narrowPeak
3
bigBed narrowPeak
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
2
hic
1
bedpe bed3+
1
tar
Organism
152
Homo sapiens
Biosample type
146
tissue
6
primary cell
Organ
576
pancreas
506
connective tissue
412
adipose tissue
292
epithelium
227
kidney
216
liver
212
heart
147
bone element
88
vasculature
85
blood vessel
64
brain
62
artery
56
musculature of body
48
limb
28
eye
20
lung
18
ureter
15
embryo
8
blood
8
bodily fluid
7
nerve
5
vein
4
skeleton
4
spleen
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
151
AMP
1
T1D
Genome assembly (visualization)
63
hg19
60
GRCh38
Lab
151
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
1
audit script error
assay_slims!
DNA binding
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
152 results
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RNA microarray
total RNA-seq
DNase-seq
Hi-C
FAIRE-seq
pCHi-C
tissue
bone element
84
bone tissue
58
acetabular part of hip bone
1
ilium
1
ischium
1
+ See 1 more…
primary cell
endothelial cell of umbilical vein
2
2
1
megakaryocyte
1
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