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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
single cell RNA-seq
21
total RNA-seq
3
ATAC-seq
RNA microarray
Assay category
64
Transcription
3
DNA accessibility
Date released
623
February, 2021
291
May, 2020
275
August, 2021
234
May, 2021
205
February, 2023
200
May, 2022
187
June, 2019
168
July, 2018
115
August, 2017
108
July, 2019
72
October, 2019
61
March, 2020
59
September, 2020
49
April, 2018
48
November, 2019
47
September, 2023
41
September, 2018
25
February, 2020
19
April, 2020
18
November, 2018
16
January, 2021
16
November, 2020
15
February, 2018
15
May, 2023
8
December, 2019
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
Available data
41
fastq
19
zippedFastqFolder
8
bigWig
7
tsv
5
bam
Organism
67
Homo sapiens
Biosample type
64
primary cell
2
in vitro differentiated cells
1
tissue
Organ
24
epithelium
19
pancreas
5
liver
1
kidney
Project
59
HPAP
8
AMP
Genome assembly (visualization)
8
GRCh38
5
hg19
Lab
59
Klaus Kaestner, Upenn
8
AMP-T2D consortium
Audit category:
2
audit script error
2
inconsistent ontology term
assay_slims!
DNA binding
assay_title!
RNA microarray
BIOSAMPLE
ASSAY
67 results
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single cell RNA-seq
total RNA-seq
ATAC-seq
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
hepatocyte
5
pancreatic beta cell
1
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
tissue
kidney
1
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