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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
209
DNase-seq
27
ATAC-seq
19
RRBS
WGBS
5
FAIRE-seq
Assay category
DNA binding
241
DNA accessibility
19
DNA methylation
Date released
187
June, 2019
17
July, 2019
14
August, 2017
14
September, 2018
12
October, 2019
10
November, 2018
5
September, 2017
1
November, 2020
Available data
1796
bam
1762
bigWig
1594
tsv
492
bed narrowPeak
484
fastq
241
bigBed narrowPeak
220
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
161
txt
112
zippedFastqFolder
64
xls
23
bedpe bed3+
23
hic
19
bed bedMethyl
19
bigBed bedMethyl
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
2
ibed
1
bedpe
1
tar
1
vcf
Organism
260
Homo sapiens
Biosample type
193
tissue
62
primary cell
3
in vitro differentiated cells
2
cell line
Organ
84
kidney
46
epithelium
36
limb
36
musculature of body
35
brain
34
pancreas
32
heart
18
ureter
14
connective tissue
13
vasculature
10
blood vessel
8
liver
5
eye
4
adipose tissue
4
artery
3
vein
2
nerve
1
pericardium
1
spleen
Project
260
AMP
Genome assembly (visualization)
237
hg19
231
GRCh38
Lab
260
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
assay_slims!
DNA binding
assay_title!
WGBS
BIOSAMPLE
ASSAY
260 results
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Clear Filters
DNase-seq
ATAC-seq
RRBS
FAIRE-seq
tissue
heart
18
muscle of arm
17
brain
14
1
kidney
13
1
1
muscle of leg
13
+ See 44 more…
primary cell
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
cardiac fibroblast
3
1
pancreatic ductal cell
4
+ See 22 more…
in vitro differentiated cells
adipocyte
1
2
cell line
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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