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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
545
total RNA-seq
84
RNA microarray
snATAC-seq
22
ATAC-seq
18
single cell RNA-seq
6
WGBS
3
snDrop-seq
2
pCHi-C
Assay category
563
Transcription
22
DNA accessibility
DNA binding
6
DNA methylation
Date released
680
February, 2021
291
May, 2020
270
August, 2021
234
May, 2021
203
February, 2023
187
June, 2019
178
May, 2022
168
July, 2018
115
August, 2017
108
July, 2019
72
October, 2019
61
March, 2020
59
September, 2020
49
April, 2018
48
November, 2019
47
September, 2023
41
September, 2018
25
February, 2020
18
November, 2018
16
November, 2020
15
February, 2018
15
May, 2023
10
December, 2019
9
April, 2020
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
December, 2018
Available data
564
bam
559
tsv
546
bigWig
89
txt
18
bed narrowPeak
18
fastq
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
680
Homo sapiens
Biosample type
545
tissue
88
cell line
26
in vitro differentiated cells
21
primary cell
Organ
455
connective tissue
386
adipose tissue
150
bone element
60
artery
60
blood vessel
60
heart
60
vasculature
32
epithelium
32
pancreas
8
kidney
8
skeleton
6
limb
3
liver
Project
662
AMP
18
HPAP
Genome assembly (visualization)
569
hg19
563
GRCh38
Lab
662
AMP-T2D consortium
18
Klaus Kaestner, Upenn
Audit category:
128
inconsistent ontology term
5
audit script error
1
inconsistent replicate
assay_slims!
DNA binding
assay_title!
snATAC-seq
BIOSAMPLE
ASSAY
680 results
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total RNA-seq
RNA microarray
ATAC-seq
single cell RNA-seq
WGBS
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
kidney
5
visceral abdominal adipose tissue
3
+ See 13 more…
cell line
smooth muscle cell of the coronary artery
52
8
EndoC_BH1
26
HepG2
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
primary cell
Langerhans cell
12
pancreatic alpha cell
6
osteoblast
1
1
1
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