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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
84
RNA microarray
27
snATAC-seq
22
ATAC-seq
18
single cell RNA-seq
6
WGBS
3
snDrop-seq
2
pCHi-C
Assay category
49
DNA accessibility
18
Transcription
DNA binding
6
DNA methylation
Date released
202
August, 2021
187
June, 2019
174
May, 2022
162
February, 2021
112
February, 2023
101
May, 2020
64
July, 2019
52
May, 2021
48
July, 2018
47
September, 2023
46
March, 2020
43
April, 2018
43
September, 2020
42
October, 2019
28
November, 2019
26
August, 2017
19
April, 2020
18
November, 2018
16
January, 2021
15
September, 2018
14
May, 2023
12
November, 2020
8
January, 2018
8
October, 2017
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
1
December, 2018
Available data
89
txt
45
fastq
19
bam
18
bed narrowPeak
14
tsv
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
1
bigWig
Organism
162
Homo sapiens
Biosample type
101
tissue
47
primary cell
10
cell line
4
in vitro differentiated cells
Organ
92
bone element
8
artery
8
blood vessel
8
heart
8
kidney
8
skeleton
8
vasculature
6
connective tissue
6
epithelium
6
limb
6
pancreas
3
liver
Project
117
AMP
45
HPAP
Genome assembly (visualization)
24
hg19
18
GRCh38
Lab
117
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
32
audit script error
1
inconsistent replicate
assay_slims!
DNA binding
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
162 results
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Clear Filters
RNA microarray
snATAC-seq
ATAC-seq
single cell RNA-seq
WGBS
snDrop-seq
pCHi-C
tissue
bone element
84
kidney
5
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
+ See 9 more…
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
cell line
smooth muscle cell of the coronary artery
8
HepG2
1
1
in vitro differentiated cells
adipocyte
4
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