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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
2
pCHi-C
Assay category
401
Transcription
DNA binding
8
DNA accessibility
6
DNA methylation
Date released
386
February, 2021
12
July, 2019
7
August, 2017
2
February, 2020
1
August, 2018
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
406
bigWig
405
bam
401
tsv
7
fastq
6
bed narrowPeak
4
bigBed narrowPeak
2
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
417
Homo sapiens
Biosample type
414
tissue
2
primary cell
1
in vitro differentiated cells
Organ
724
pancreas
526
connective tissue
417
adipose tissue
393
epithelium
226
liver
172
kidney
167
heart
159
bone element
128
vasculature
125
blood vessel
105
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
9
blood
9
bodily fluid
8
nerve
7
embryo
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
417
AMP
Genome assembly (visualization)
407
hg19
406
GRCh38
Lab
417
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
DNA binding
assay_title!
whole genome sequencing assay
month_released!
August, 2021
BIOSAMPLE
ASSAY
417 results
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total RNA-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
pCHi-C
tissue
adipose tissue
382
3
3
1
omental fat pad
5
1
1
2
subcutaneous adipose tissue
7
1
1
subcutaneous abdominal adipose tissue
3
visceral abdominal adipose tissue
3
+ See 1 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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