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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1533
total RNA-seq
531
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
18
Transcription
Date released
18
July, 2019
5
January, 2018
Available data
23
bigWig
18
bam
18
tsv
5
fastq
Organism
23
Homo sapiens
Biosample type
16
tissue
4
in vitro differentiated cells
2
primary cell
1
stem cell
Organ
4
brain
3
adipose tissue
3
connective tissue
3
liver
2
musculature of body
2
pancreas
1
embryo
1
heart
1
kidney
Project
23
AMP
Genome assembly (visualization)
18
GRCh38
18
hg19
5
hg18
Lab
23
AMP-T2D consortium
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
23 results
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small RNA-seq
GRO-seq
tissue
body of pancreas
2
right lobe of liver
2
cerebellum (Hemisphere)
1
diencephalon
1
frontal cortex
1
+ See 9 more…
in vitro differentiated cells
Posterior foregut
1
definitive endodermal cell
1
pancreatic endoderm
1
primitive gut cell
1
primary cell
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
stem cell
hESC
1
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