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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
42
ATAC-seq
4
Hi-C
2
Capture-C
2
pCHi-C
1
DNase-seq
Assay category
127
Transcription
DNA binding
43
DNA accessibility
4
3D chromatin structure
Date released
84
May, 2021
26
February, 2021
21
August, 2021
15
February, 2018
12
February, 2023
8
October, 2019
6
March, 2020
5
November, 2019
1
August, 2017
Available data
145
bam
140
bigWig
127
tsv
22
bed narrowPeak
16
fastq
7
bed bedgraph
6
bed bed3+
6
bedpe bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
178
Homo sapiens
Biosample type
1226
tissue
381
primary cell
178
in vitro differentiated cells
123
cell line
Organ
25
connective tissue
6
embryo
2
epithelium
1
heart
Project
178
AMP
Genome assembly (visualization)
178
hg19
145
GRCh38
4
hg18
Lab
166
AMP-T2D consortium
7
Struan F.A. Grant, CHOP
5
Kyle Gaulton, UCSD
Audit category:
103
inconsistent ontology term
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
178 results
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total RNA-seq
ATAC-seq
Hi-C
Capture-C
pCHi-C
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
19
1
1
neural progenitor cell
7
10
adipocyte
4
8
1
1
induced pluripotent stem cell
9
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