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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
202
DNase-seq
2
ATAC-seq
Assay category
204
DNA accessibility
DNA binding
Date released
183
June, 2019
9
November, 2018
7
October, 2019
2
August, 2017
1
March, 2019
1
November, 2020
1
October, 2017
Available data
1661
bam
1634
bigWig
1450
tsv
494
fastq
476
bed narrowPeak
237
bigBed narrowPeak
214
bed bed3+
204
bed broadPeak
202
bigBed broadPeak
153
zippedFastqFolder
76
txt
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
18
hic
16
bedpe bed3+
12
bed bed3
8
csv
6
bed bedgraph
5
hdf5
3
cool
1
bedpe
1
tar
1
vcf
Organism
204
Homo sapiens
Biosample type
177
tissue
25
primary cell
1
cell line
1
in vitro differentiated cells
Organ
77
kidney
35
limb
32
brain
32
musculature of body
29
heart
18
ureter
15
epithelium
10
vasculature
9
blood vessel
9
pancreas
8
connective tissue
5
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
204
AMP
Genome assembly (visualization)
202
GRCh38
180
hg19
Lab
202
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
inconsistent ontology term
assay_slims!
DNA binding
audit.ERROR.category!
inconsistent ontology term
assay_title!
DNAme array
BIOSAMPLE
ASSAY
204 results
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Clear Filters
DNase-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
12
+ See 40 more…
primary cell
cardiac fibroblast
2
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
astrocyte of the cerebellum
1
+ See 16 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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