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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1036
total RNA-seq
259
ATAC-seq
177
DNase-seq
174
single cell RNA-seq
28
snATAC-seq
27
WGBS
23
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
Assay category
1226
Transcription
DNA binding
464
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
461
February, 2021
229
August, 2021
162
June, 2019
143
May, 2020
120
July, 2018
107
August, 2017
95
February, 2023
75
July, 2019
66
May, 2022
47
October, 2019
47
September, 2023
40
May, 2021
39
November, 2019
36
March, 2020
24
February, 2020
19
April, 2020
15
May, 2023
15
November, 2018
8
January, 2021
8
October, 2017
6
April, 2018
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1179
bam
1152
bigWig
1073
tsv
383
bed narrowPeak
179
bigBed narrowPeak
177
bed broadPeak
176
bed bed3+
175
bigBed broadPeak
155
fastq
73
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1775
Homo sapiens
Biosample type
1777
tissue
779
primary cell
111
cell line
88
in vitro differentiated cells
6
stem cell
Organ
472
connective tissue
414
adipose tissue
386
pancreas
271
kidney
206
liver
190
heart
74
bone element
60
blood vessel
60
vasculature
55
limb
54
brain
54
eye
52
musculature of body
45
artery
20
lung
18
ureter
16
skeleton
15
epithelium
8
nerve
5
spleen
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
Project
1682
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1267
GRCh38
1220
hg19
Lab
1465
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
inconsistent ontology term
9
audit script error
assay_slims!
DNA binding
audit.ERROR.category!
inconsistent ontology term
assay_title!
FAIRE-seq
BIOSAMPLE
ASSAY
1777 results
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total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
MeRIP-seq
RNA microarray
snDrop-seq
tissue
adipose tissue
382
3
3
1
islet of Langerhans
298
68
1
7
4
3
1
4
kidney
49
75
13
64
6
1
1
liver
167
20
2
1
3
1
1
1
1
bone tissue
58
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