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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
total RNA-seq
32
ATAC-seq
4
GRO-seq
2
Capture-C
2
pCHi-C
1
DNase-seq
Assay category
DNA binding
47
Transcription
33
DNA accessibility
Date released
24
May, 2021
21
August, 2021
15
February, 2018
11
February, 2023
8
February, 2021
4
January, 2018
2
October, 2019
1
August, 2017
1
August, 2018
1
March, 2020
Available data
56
bigWig
51
bam
41
tsv
21
fastq
14
bed narrowPeak
6
bed bedgraph
5
bed bed3
4
bed bed3+
3
bigBed narrowPeak
2
txt
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
Organism
88
Homo sapiens
Biosample type
1781
tissue
456
primary cell
111
cell line
88
in vitro differentiated cells
6
stem cell
Organ
26
connective tissue
5
embryo
1
adipose tissue
1
epithelium
1
heart
Project
88
AMP
Genome assembly (visualization)
75
hg19
51
GRCh38
4
hg18
Lab
72
AMP-T2D consortium
10
Kyle Gaulton, UCSD
6
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
2
audit script error
assay_slims!
DNA binding
audit.ERROR.category!
inconsistent ontology term
award.project!
HPAP
BIOSAMPLE
ASSAY
88 results
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total RNA-seq
ATAC-seq
GRO-seq
Capture-C
pCHi-C
DNase-seq
in vitro differentiated cells
neural progenitor cell
7
10
adipocyte
5
8
1
1
embryonic stem cell
7
6
1
induced pluripotent stem cell
9
chondrocyte
5
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