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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
341
total RNA-seq
92
ATAC-seq
74
single cell RNA-seq
10
MeRIP-seq
8
DNase-seq
6
Hi-C
4
WGBS
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
1
snATAC-seq
Assay category
417
Transcription
DNA binding
103
DNA accessibility
6
3D chromatin structure
6
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
157
July, 2018
94
August, 2017
57
May, 2021
42
November, 2019
40
September, 2018
39
April, 2018
26
February, 2021
24
May, 2022
10
November, 2020
7
March, 2020
7
November, 2018
6
July, 2019
5
March, 2019
5
October, 2017
5
October, 2019
5
September, 2017
4
August, 2021
4
June, 2019
3
August, 2018
2
October, 2018
1
August, 2022
1
February, 2020
1
February, 2023
1
June, 2018
Available data
489
bam
450
bigWig
409
tsv
255
fastq
74
bed narrowPeak
32
bigBed narrowPeak
9
bed broadPeak
8
bed bed3+
7
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
4
bedpe bed3+
4
hic
1
bedpe
1
hdf5
Organism
545
Homo sapiens
Biosample type
360
tissue
124
primary cell
62
cell line
Organ
546
pancreas
530
connective tissue
418
adipose tissue
259
heart
255
kidney
241
epithelium
239
liver
158
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
18
ureter
16
skeleton
15
embryo
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
1
adrenal gland
1
blood
1
bodily fluid
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
546
AMP
152
HPAP
30
T1D
Genome assembly (visualization)
490
hg19
466
GRCh38
Lab
503
AMP-T2D consortium
25
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
64
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent assembly
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
546 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
MeRIP-seq
DNase-seq
Hi-C
WGBS
Capture-C
FAIRE-seq
RRBS
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
snATAC-seq
tissue
islet of Langerhans
277
47
4
1
3
1
1
1
body of pancreas
3
4
4
2
2
pancreas
2
2
1
2
1
1
1
primary cell
pancreatic beta cell
10
7
12
pancreatic alpha cell
10
6
12
pancreatic acinar cell
4
5
12
pancreatic ductal cell
4
4
10
pancreatic delta cell
11
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cell line
EndoC_BH1
31
19
6
1
2
1
Panc1
1
1
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