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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
total RNA-seq
2
Hi-C
2
STARR-seq
2
pCHi-C
1
ATAC-seq
1
WGBS
1
whole genome sequencing assay
Assay category
DNA binding
14
Transcription
2
3D chromatin structure
1
DNA accessibility
1
DNA methylation
1
DNA sequencing
Date released
13
August, 2021
5
January, 2019
2
February, 2021
1
December, 2018
1
May, 2020
1
November, 2018
Available data
15
tsv
7
bam
7
fastq
6
bigWig
1
bed bed3
1
bed bed3+
1
bed bedMethyl
1
bed narrowPeak
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
vcf
Organism
23
Homo sapiens
Biosample type
23
cell line
Organ
23
liver
Project
23
AMP
Genome assembly (visualization)
8
hg19
7
GRCh38
Lab
13
Bing Ren, UCSD
10
AMP-T2D consortium
Audit category:
1
inconsistent replicate
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
23 results
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total RNA-seq
Hi-C
STARR-seq
pCHi-C
ATAC-seq
WGBS
whole genome sequencing assay
cell line
HepG2
14
2
2
2
1
1
1
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