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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1102
total RNA-seq
309
ATAC-seq
177
DNase-seq
175
single cell RNA-seq
87
RNA microarray
37
pCHi-C
28
snATAC-seq
23
WGBS
21
Hi-C
13
small RNA-seq
10
MeRIP-seq
10
RRBS
5
GRO-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
23
DNA methylation
Date released
11
July, 2019
6
August, 2017
6
November, 2018
Available data
17
bam
16
bed bedMethyl
16
bigBed bedMethyl
16
bigWig
9
fastq
Organism
23
Homo sapiens
Biosample type
primary cell
23
tissue
Organ
8
heart
6
adipose tissue
6
connective tissue
liver
4
pancreas
2
blood vessel
2
spleen
2
vasculature
1
limb
1
musculature of body
Project
23
AMP
Genome assembly (visualization)
16
GRCh38
Lab
23
AMP-T2D consortium
assay_slims!
DNA binding
biosample_type!
primary cell
organ_slims!
liver
BIOSAMPLE
ASSAY
23 results
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WGBS
tissue
heart left ventricle
4
adipose tissue
3
subcutaneous abdominal adipose tissue
3
aorta
2
body of pancreas
2
+ See 6 more…
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