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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
118
total RNA-seq
28
ATAC-seq
9
WGBS
8
DNase-seq
5
GRO-seq
2
FAIRE-seq
2
RRBS
1
pCHi-C
Assay category
DNA binding
118
Transcription
38
DNA accessibility
11
DNA methylation
Date released
98
August, 2017
24
May, 2022
15
February, 2018
13
November, 2018
8
October, 2017
6
April, 2018
5
January, 2018
2
July, 2018
1
August, 2018
1
March, 2019
Available data
1284
bam
1231
bigWig
1161
tsv
398
bed narrowPeak
185
bigBed narrowPeak
182
bed bed3+
177
bed broadPeak
175
bigBed broadPeak
173
fastq
161
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
17
bedpe bed3+
15
hic
10
bed bed3
7
bed bedgraph
5
csv
2
ibed
1
bedpe
1
hdf5
Organism
173
Homo sapiens
Biosample type
primary cell
151
tissue
21
in vitro differentiated cells
1
stem cell
Organ
136
pancreas
liver
8
connective tissue
7
adipose tissue
5
embryo
4
spleen
3
brain
2
musculature of body
Project
173
AMP
Genome assembly (visualization)
150
hg19
137
GRCh38
5
hg18
Lab
147
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
assay_slims!
DNA binding
biosample_type!
primary cell
organ_slims!
liver
BIOSAMPLE
ASSAY
173 results
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total RNA-seq
ATAC-seq
WGBS
DNase-seq
GRO-seq
FAIRE-seq
RRBS
pCHi-C
tissue
islet of Langerhans
103
20
1
1
body of pancreas
4
2
2
spleen
1
2
1
adipose tissue
3
pancreas
2
1
+ See 5 more…
in vitro differentiated cells
pancreatic endoderm
4
1
definitive endodermal cell
2
1
primitive gut cell
2
1
embryonic stem cell
2
endocrine cell
2
+ See 5 more…
stem cell
hESC
1
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