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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
964
total RNA-seq
250
ATAC-seq
176
single cell RNA-seq
173
DNase-seq
87
RNA microarray
39
pCHi-C
24
WGBS
18
Hi-C
17
snATAC-seq
14
small RNA-seq
9
RRBS
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
FAIRE-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
17
DNA accessibility
Date released
10
April, 2020
6
August, 2021
1
May, 2022
Available data
1
bed bed3+
1
txt
Organism
16
Homo sapiens
Biosample type
primary cell
17
tissue
Organ
pancreas
10
lung
6
kidney
1
musculature of body
Project
10
LungMap
7
AMP
Genome assembly (visualization)
1
hg19
Lab
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
1
AMP-T2D consortium
Audit category:
1
audit script error
assay_slims!
DNA binding
biosample_type!
primary cell
organ_slims!
pancreas
BIOSAMPLE
ASSAY
17 results
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snATAC-seq
tissue
lung
10
kidney
6
skeletal muscle tissue
1
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