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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
104
total RNA-seq
10
ATAC-seq
2
DNase-seq
1
WGBS
Assay category
DNA binding
104
Transcription
12
DNA accessibility
1
DNA methylation
Date released
87
February, 2021
8
August, 2021
6
October, 2019
5
January, 2019
4
March, 2020
4
May, 2021
2
November, 2019
1
November, 2018
Available data
119
tsv
117
bam
111
bigWig
12
bed narrowPeak
7
fastq
3
bed bed3+
2
bedpe bed3+
2
bigBed narrowPeak
2
hic
1
bed bed3
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
1
hdf5
1
txt
1
vcf
Organism
117
Homo sapiens
Biosample type
1185
tissue
367
primary cell
145
in vitro differentiated cells
117
cell line
Organ
60
artery
60
blood vessel
60
heart
60
vasculature
36
epithelium
35
pancreas
8
embryo
7
liver
5
kidney
Project
115
AMP
2
T1D
Genome assembly (visualization)
117
GRCh38
116
hg19
Lab
117
AMP-T2D consortium
Audit category:
37
inconsistent ontology term
1
inconsistent replicate
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
117 results
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total RNA-seq
ATAC-seq
DNase-seq
WGBS
cell line
smooth muscle cell of the coronary artery
52
8
EndoC_BH1
33
1
H1-hESC
8
HepG2
5
1
1
early embryonic cell
2
glomerular visceral epithelial cell
1
1
Panc1
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
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