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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
total RNA-seq
42
ATAC-seq
9
pCHi-C
5
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNase-seq
Assay category
DNA binding
140
Transcription
43
DNA accessibility
4
3D chromatin structure
Date released
89
May, 2021
26
February, 2021
21
August, 2021
16
February, 2023
15
February, 2018
12
March, 2020
8
October, 2019
5
January, 2018
5
November, 2019
2
December, 2019
2
March, 2023
1
August, 2017
1
August, 2018
Available data
145
bam
145
bigWig
135
tsv
22
bed narrowPeak
22
fastq
7
bed bedgraph
7
bedpe bed3+
6
bed bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
201
Homo sapiens
Biosample type
1870
tissue
809
primary cell
196
in vitro differentiated cells
178
cell line
7
stem cell
Organ
31
connective tissue
7
embryo
2
epithelium
1
adipose tissue
1
heart
Project
201
AMP
2
community
Genome assembly (visualization)
178
hg19
145
GRCh38
5
hg18
Lab
184
AMP-T2D consortium
10
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
2
Anna Gloyn, Oxford
Audit category:
109
inconsistent ontology term
2
audit script error
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
203 results
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total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
19
1
1
neural progenitor cell
7
10
adipocyte
5
8
1
1
embryonic stem cell
7
6
1
cardiomyocytes (cardiac muscle cell)
3
1
2
2
2
induced pluripotent stem cell
9
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
pancreatic endoderm
4
1
immature adipocyte
2
2
definitive endodermal cell
2
1
lymphocyte of B lineage (iPSC)
1
1
1
primitive gut cell
2
1
endocrine cell
2
osteoblast
1
1
posterior foregut
2
preadipocyte
1
1
Posterior foregut
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
cardiac fibroblast
1
endothelial cell
1
hematopoietic multipotent progenitor cell
1
intermediate cardiomyocytes
1
intermediate endothelial cell
1
intermediate smooth muscle cell
1
islet precursor cell
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
neuron cell of Hypothalamus (neuron)
1
smooth muscle cell
1
stem cell
1
white fat cell
1
stem cell
SB Ad3.1
1
1
hESC
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
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