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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1284
total RNA-seq
460
ATAC-seq
361
single cell RNA-seq
209
DNase-seq
87
RNA microarray
84
snATAC-seq
74
WGBS
42
pCHi-C
26
Hi-C
21
RRBS
18
small RNA-seq
5
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNAme array
Assay category
1663
Transcription
DNA binding
758
DNA accessibility
96
DNA methylation
26
3D chromatin structure
Target of assay
5
control
2
nucleotide modification
Date released
593
February, 2021
290
May, 2020
229
August, 2021
200
May, 2022
187
June, 2019
183
February, 2023
168
July, 2018
125
May, 2021
114
August, 2017
108
July, 2019
59
September, 2020
57
October, 2019
49
April, 2018
47
September, 2023
41
September, 2018
40
November, 2019
39
March, 2020
25
February, 2020
19
April, 2020
17
November, 2018
16
January, 2021
15
May, 2023
10
November, 2020
8
December, 2019
8
October, 2017
7
August, 2020
5
March, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
January, 2018
2
October, 2018
1
August, 2022
1
March, 2023
Available data
1552
bam
1523
bigWig
1346
tsv
472
fastq
458
bed narrowPeak
236
bigBed narrowPeak
211
bed bed3+
206
bed broadPeak
204
bigBed broadPeak
157
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
17
hic
14
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
3
cool
1
bedpe
1
tar
Organism
2677
Homo sapiens
Biosample type
1870
tissue
809
primary cell
196
in vitro differentiated cells
178
cell line
7
stem cell
Organ
664
pancreas
500
connective tissue
417
adipose tissue
329
epithelium
293
kidney
216
liver
198
heart
159
bone element
74
vasculature
71
blood vessel
68
brain
57
musculature of body
56
eye
56
limb
47
artery
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2139
AMP
324
HPAP
149
T1D
47
KPMP
19
LungMap
1
ITG
Genome assembly (visualization)
1607
hg19
1598
GRCh38
Lab
1920
AMP-T2D consortium
324
Klaus Kaestner, Upenn
174
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
118
inconsistent ontology term
40
audit script error
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
2679 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
FAIRE-seq
MeRIP-seq
snDrop-seq
DNAme array
tissue
adipose tissue
382
3
3
1
islet of Langerhans
298
68
1
7
4
3
1
1
4
kidney
49
75
64
13
6
1
1
1
liver
167
20
1
2
3
1
1
1
1
bone element
84
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primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
35
12
31
1
pancreatic beta cell
21
23
12
16
1
monocyte
54
15
1
1
exocrine cell
39
+ See 92 more…
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