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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1020
total RNA-seq
256
ATAC-seq
174
single cell RNA-seq
151
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
23
pCHi-C
16
Hi-C
12
small RNA-seq
10
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
1206
Transcription
DNA binding
438
DNA accessibility
37
DNA methylation
16
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
143
May, 2020
138
June, 2019
120
July, 2018
108
August, 2017
94
February, 2023
66
July, 2019
66
May, 2022
47
September, 2023
45
October, 2019
40
May, 2021
40
November, 2019
36
March, 2020
19
April, 2020
15
May, 2023
14
November, 2018
13
February, 2020
8
January, 2021
7
October, 2017
6
April, 2018
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1146
bam
1118
bigWig
1053
tsv
361
bed narrowPeak
157
txt
156
bigBed narrowPeak
154
fastq
151
bed broadPeak
150
bed bed3+
149
bigBed broadPeak
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
4
bed bed3
1
bedpe
Organism
1812
Homo sapiens
Biosample type
1814
tissue
797
primary cell
196
in vitro differentiated cells
178
cell line
7
stem cell
Organ
473
connective tissue
415
adipose tissue
388
pancreas
272
kidney
206
liver
190
heart
158
bone element
60
blood vessel
60
vasculature
brain
56
limb
54
eye
53
musculature of body
45
artery
20
lung
18
ureter
16
skeleton
15
epithelium
8
nerve
5
spleen
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1719
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1231
GRCh38
1197
hg19
Lab
1502
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
9
audit script error
assay_slims!
DNA binding
organ_slims!
brain
BIOSAMPLE
ASSAY
1814 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
tissue
adipose tissue
382
3
3
1
islet of Langerhans
298
67
1
7
4
3
1
4
1
kidney
49
75
64
13
6
1
1
1
liver
167
20
1
2
3
1
1
1
1
bone element
84
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