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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
39
ATAC-seq
27
DNase-seq
15
total RNA-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
109
Transcription
DNA binding
66
DNA accessibility
9
DNA methylation
3
3D chromatin structure
Date released
92
August, 2021
36
February, 2023
27
June, 2019
20
July, 2019
7
March, 2020
3
February, 2020
3
October, 2019
2
May, 2021
Available data
111
tsv
66
bed narrowPeak
50
bam
50
bigWig
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
27
bigBed narrowPeak
7
bed bedMethyl
7
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
190
Homo sapiens
Biosample type
190
tissue
60
cell line
8
primary cell
1
in vitro differentiated cells
Organ
473
connective tissue
415
adipose tissue
388
pancreas
272
kidney
206
liver
190
heart
158
bone element
60
blood vessel
60
vasculature
56
brain
56
limb
54
eye
53
musculature of body
45
artery
20
lung
18
ureter
16
skeleton
15
epithelium
8
nerve
5
spleen
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
190
AMP
Genome assembly (visualization)
85
GRCh38
46
hg19
Lab
190
AMP-T2D consortium
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
190 results
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single cell RNA-seq
ATAC-seq
DNase-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
coronary artery
36
2
1
heart left ventricle
18
2
3
3
4
1
1
1
heart
1
18
4
1
1
1
heart right ventricle
17
1
1
2
1
1
right cardiac atrium
18
1
1
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