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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
total RNA-seq
4
Hi-C
4
WGBS
3
pCHi-C
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
DNA binding
31
Transcription
DNA accessibility
6
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Date released
20
May, 2022
13
August, 2021
4
August, 2017
3
July, 2019
2
February, 2021
2
March, 2020
1
December, 2018
1
February, 2020
1
May, 2020
Available data
174
tsv
164
bigWig
bam
9
fastq
3
bed bedMethyl
3
bigBed bedMethyl
2
bed bed3+
2
bedpe bed3+
2
hic
1
csv
1
hdf5
1
vcf
Organism
47
Homo sapiens
Biosample type
29
tissue
16
cell line
2
primary cell
Organ
139
pancreas
127
kidney
126
epithelium
106
heart
89
bone element
47
liver
24
eye
20
connective tissue
19
brain
16
vasculature
15
blood vessel
15
musculature of body
10
adipose tissue
10
lung
7
limb
4
artery
4
skeleton
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
47
AMP
Genome assembly (visualization)
6
hg19
Lab
20
Karen Mohlke, UNC
14
AMP-T2D consortium
13
Bing Ren, UCSD
assay_slims!
DNA binding
DNA accessibility
files.file_type!
bam
BIOSAMPLE
ASSAY
47 results
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total RNA-seq
Hi-C
WGBS
pCHi-C
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
20
1
3
1
1
1
right lobe of liver
1
1
cell line
HepG2
9
2
2
2
1
primary cell
endothelial cell of hepatic sinusoid
1
hepatocyte
1
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