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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
260
ATAC-seq
174
single cell RNA-seq
87
RNA microarray
27
WGBS
27
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
DNase-seq
Assay category
1227
Transcription
DNA binding
293
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
143
May, 2020
120
July, 2018
108
August, 2017
95
February, 2023
77
July, 2019
65
May, 2022
47
September, 2023
43
October, 2019
40
May, 2021
40
November, 2019
38
March, 2020
25
February, 2020
19
April, 2020
15
May, 2023
8
January, 2021
8
October, 2017
7
November, 2018
6
April, 2018
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1185
bam
1157
bigWig
1076
tsv
389
bed narrowPeak
184
bigBed narrowPeak
178
bed broadPeak
bed bed3+
176
bigBed broadPeak
157
fastq
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1691
Homo sapiens
Biosample type
1693
tissue
775
primary cell
190
in vitro differentiated cells
175
cell line
7
stem cell
Organ
471
connective tissue
413
adipose tissue
382
pancreas
204
kidney
203
liver
163
heart
158
bone element
55
blood vessel
55
vasculature
51
eye
41
artery
29
brain
20
limb
20
lung
20
musculature of body
16
skeleton
15
epithelium
6
nerve
4
spleen
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1598
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1093
GRCh38
1065
hg19
Lab
1381
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
8
audit script error
assay_slims!
DNA binding
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
1693 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
adipose tissue
382
3
3
1
islet of Langerhans
298
68
7
4
3
1
1
4
1
kidney
49
75
64
6
1
1
1
liver
167
20
1
3
1
1
1
1
bone element
84
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