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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1173
total RNA-seq
302
ATAC-seq
179
DNase-seq
176
single cell RNA-seq
87
RNA microarray
30
pCHi-C
28
snATAC-seq
20
Hi-C
16
small RNA-seq
11
WGBS
4
FAIRE-seq
4
GRO-seq
4
MeRIP-seq
3
snDrop-seq
2
Capture-C
2
RRBS
Assay category
1365
Transcription
DNA binding
513
DNA accessibility
20
3D chromatin structure
13
DNA methylation
Target of assay
2
control
2
nucleotide modification
Date released
571
February, 2021
250
August, 2021
163
June, 2019
143
May, 2020
129
May, 2021
120
July, 2018
111
February, 2023
104
August, 2017
66
May, 2022
63
July, 2019
55
October, 2019
47
September, 2023
46
March, 2020
45
November, 2019
25
February, 2020
19
April, 2020
15
February, 2018
15
May, 2023
10
November, 2018
8
January, 2021
8
October, 2017
6
April, 2018
6
January, 2018
5
December, 2019
5
March, 2019
4
November, 2020
1
August, 2018
1
August, 2022
Available data
1330
bam
1301
bigWig
1207
tsv
411
bed narrowPeak
187
bigBed narrowPeak
183
bed bed3+
179
bed broadPeak
178
fastq
177
bigBed broadPeak
160
txt
64
xls
bed bedMethyl
25
bigBed bedMethyl
17
bedpe bed3+
15
hic
10
bed bed3
7
bed bedgraph
6
csv
2
ibed
1
bedpe
Organism
2039
Homo sapiens
Biosample type
1845
tissue
799
primary cell
196
in vitro differentiated cells
177
cell line
7
stem cell
Organ
501
connective tissue
414
adipose tissue
382
pancreas
271
kidney
205
liver
184
heart
158
bone element
59
blood vessel
59
vasculature
55
brain
55
limb
54
eye
50
musculature of body
45
artery
20
lung
18
ureter
17
epithelium
16
skeleton
8
nerve
7
embryo
3
spleen
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1946
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1398
GRCh38
1395
hg19
4
hg18
Lab
1712
AMP-T2D consortium
142
Katalin Susztak, Upenn
62
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
197
inconsistent ontology term
11
audit script error
assay_slims!
DNA binding
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
2041 results
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total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
WGBS
FAIRE-seq
GRO-seq
MeRIP-seq
snDrop-seq
Capture-C
RRBS
tissue
adipose tissue
382
3
1
1
islet of Langerhans
298
68
1
4
7
3
1
4
kidney
49
75
13
64
6
1
1
liver
167
20
2
1
1
1
1
3
bone element
84
+ See 103 more…
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
19
1
1
neural progenitor cell
7
10
adipocyte
5
8
1
1
embryonic stem cell
7
6
1
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