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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
62
total RNA-seq
12
ATAC-seq
10
snATAC-seq
9
single cell RNA-seq
2
pCHi-C
Assay category
71
Transcription
22
DNA accessibility
Date released
150
February, 2021
19
April, 2020
8
February, 2023
1
March, 2020
1
May, 2021
Available data
88
txt
66
bam
59
tsv
58
bigWig
8
bed narrowPeak
4
bed bed3
Organism
178
Homo sapiens
Biosample type
178
tissue
1
primary cell
Organ
722
pancreas
528
connective tissue
416
adipose tissue
389
epithelium
298
kidney
251
heart
236
liver
159
bone element
132
vasculature
130
blood vessel
107
artery
66
brain
55
eye
55
limb
53
musculature of body
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
vein
3
spleen
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
159
AMP
19
LungMap
1
T1D
Genome assembly (visualization)
70
hg19
66
GRCh38
Lab
159
AMP-T2D consortium
19
Xin Sun, UCSD
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
assay_slims!
DNA binding
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
179 results
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RNA microarray
total RNA-seq
ATAC-seq
snATAC-seq
single cell RNA-seq
pCHi-C
tissue
bone element
84
bone tissue
58
lung
10
9
1
acetabular part of hip bone
1
1
ilium
1
1
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primary cell
megakaryocyte
1
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