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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
Hi-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
whole genome sequencing assay
Assay category
DNA binding
Transcription
31
DNA accessibility
2
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
3
control
3
nucleotide modification
Date released
16
May, 2021
10
February, 2021
8
August, 2021
6
February, 2023
6
March, 2020
6
November, 2020
3
October, 2019
1
December, 2018
1
January, 2018
1
May, 2020
1
November, 2018
1
November, 2019
1
October, 2022
Available data
13
bam
12
bed narrowPeak
7
bigWig
6
tsv
3
bed bed3+
2
bedpe bed3+
2
bigBed narrowPeak
2
fastq
hic
1
bed bed3
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
1
hdf5
1
txt
1
vcf
Organism
59
Homo sapiens
Biosample type
632
tissue
367
primary cell
61
cell line
54
in vitro differentiated cells
5
stem cell
Organ
30
pancreas
29
epithelium
8
artery
8
blood vessel
8
heart
8
liver
8
vasculature
5
kidney
1
blood
1
bodily fluid
1
mammary gland
Project
56
AMP
5
T1D
Genome assembly (visualization)
17
hg19
14
GRCh38
Lab
44
AMP-T2D consortium
6
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
Audit category:
30
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
inconsistent assembly
assay_slims!
DNA binding
Transcription
files.file_type!
hic
BIOSAMPLE
ASSAY
61 results
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ATAC-seq
MeRIP-seq
pCHi-C
STARR-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
DNase-seq
Hi-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
WGBS
whole genome sequencing assay
cell line
EndoC_BH1
19
6
3
2
2
1
HepG2
1
2
2
1
1
1
smooth muscle cell of the coronary artery
8
HEK293T
2
Panc1
1
1
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