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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ATAC-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
RRBS
4
Hi-C
1
DNAme array
1
FAIRE-seq
Assay category
Transcription
288
DNA accessibility
DNA binding
58
DNA methylation
4
3D chromatin structure
Date released
101
May, 2022
100
May, 2020
35
February, 2021
30
May, 2021
24
June, 2019
14
September, 2018
13
July, 2019
12
February, 2023
8
January, 2021
7
August, 2020
7
October, 2019
6
August, 2017
5
September, 2017
3
September, 2020
2
November, 2020
Available data
115
bam
112
bigWig
101
zippedFastqFolder
69
bed narrowPeak
67
fastq
52
bigBed narrowPeak
32
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
18
tsv
10
bed bedMethyl
10
bigBed bedMethyl
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
367
Homo sapiens
Biosample type
632
tissue
367
primary cell
61
cell line
54
in vitro differentiated cells
5
stem cell
Organ
146
epithelium
118
pancreas
15
kidney
12
connective tissue
10
vasculature
9
brain
8
blood
8
bodily fluid
7
blood vessel
5
liver
4
heart
3
vein
2
eye
2
musculature of body
1
bone element
1
bone marrow
Project
199
AMP
144
HPAP
24
T1D
Genome assembly (visualization)
122
hg19
76
GRCh38
Lab
199
AMP-T2D consortium
144
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
Audit category:
27
audit script error
18
inconsistent ontology term
assay_slims!
DNA binding
Transcription
files.file_type!
hic
BIOSAMPLE
ASSAY
367 results
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ATAC-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
DNAme array
FAIRE-seq
primary cell
pancreatic alpha cell
35
31
Langerhans cell
48
pancreatic beta cell
23
16
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
CD4-positive, alpha-beta memory T cell
22
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