Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
170
DNase-seq
2
ATAC-seq
Assay category
172
DNA accessibility
DNA binding
Date released
155
June, 2019
9
November, 2018
3
October, 2019
2
August, 2017
1
March, 2019
1
November, 2020
1
October, 2017
Available data
1765
bam
1736
bigWig
1593
tsv
501
fastq
448
bed narrowPeak
205
bigBed narrowPeak
184
bed bed3+
172
bed broadPeak
170
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
2
ibed
1
bedpe
1
tar
1
vcf
Organism
172
Homo sapiens
Biosample type
142
tissue
28
primary cell
1
cell line
1
in vitro differentiated cells
Organ
78
kidney
limb
33
musculature of body
32
brain
30
heart
18
ureter
16
epithelium
11
vasculature
9
blood vessel
9
connective tissue
9
pancreas
5
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
172
AMP
Genome assembly (visualization)
170
GRCh38
148
hg19
Lab
170
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
assay_slims!
DNA binding
organ_slims!
limb
BIOSAMPLE
ASSAY
172 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ATAC-seq
tissue
heart
18
brain
14
kidney
13
renal cortex interstitium
11
renal pelvis
10
+ See 34 more…
primary cell
cardiac fibroblast
3
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
astrocyte of the cerebellum
1
+ See 18 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
Download