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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
24
ATAC-seq
1
FAIRE-seq
Assay category
DNA binding
57
DNA accessibility
Date released
24
June, 2019
14
September, 2018
7
October, 2019
6
August, 2017
5
September, 2017
1
November, 2020
Available data
629
bam
622
bigWig
524
tsv
344
fastq
153
zippedFastqFolder
103
bed narrowPeak
57
bigBed narrowPeak
43
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
13
bedpe bed3+
12
hic
11
bed bedMethyl
11
bigBed bedMethyl
7
bed bed3
7
bed bedgraph
5
hdf5
4
txt
3
cool
2
csv
2
ibed
1
tar
1
vcf
Organism
57
Homo sapiens
Biosample type
tissue
52
primary cell
3
in vitro differentiated cells
2
cell line
Organ
40
epithelium
23
pancreas
11
kidney
9
connective tissue
7
vasculature
5
blood vessel
5
brain
3
heart
3
vein
2
liver
1
eye
1
musculature of body
Project
57
AMP
Genome assembly (visualization)
52
GRCh38
50
hg19
Lab
57
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
assay_slims!
DNA binding
biosample_type!
tissue
BIOSAMPLE
ASSAY
57 results
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DNase-seq
ATAC-seq
FAIRE-seq
primary cell
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
pancreatic ductal cell
4
cardiac fibroblast
3
+ See 22 more…
in vitro differentiated cells
adipocyte
1
2
cell line
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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