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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
41
WGBS
39
ATAC-seq
21
snATAC-seq
1
Hi-C
Assay category
60
DNA accessibility
52
Transcription
41
DNA methylation
1
3D chromatin structure
Date released
134
May, 2022
19
September, 2020
1
March, 2019
Available data
1814
bam
1779
bigWig
1600
tsv
501
fastq
492
bed narrowPeak
241
bigBed narrowPeak
220
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
2
ibed
1
bedpe
1
tar
1
vcf
Organism
154
Homo sapiens
Biosample type
153
primary cell
1
tissue
Organ
81
pancreas
80
epithelium
Project
153
HPAP
1
AMP
Genome assembly (visualization)
1
hg19
Lab
153
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
154 results
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single cell RNA-seq
WGBS
ATAC-seq
snATAC-seq
Hi-C
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
tissue
islet of Langerhans
1
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