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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
620
total RNA-seq
234
ATAC-seq
176
DNase-seq
174
single cell RNA-seq
86
RNA microarray
28
snATAC-seq
24
pCHi-C
21
WGBS
16
Hi-C
14
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
DNA binding
808
Transcription
442
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
228
August, 2021
162
June, 2019
159
February, 2021
143
May, 2020
120
July, 2018
101
August, 2017
94
February, 2023
67
July, 2019
47
September, 2023
46
October, 2019
40
May, 2021
39
November, 2019
37
March, 2020
26
May, 2022
23
February, 2020
19
April, 2020
15
November, 2018
14
May, 2023
8
January, 2021
7
October, 2017
6
April, 2018
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
782
bam
733
bigWig
677
tsv
363
bed narrowPeak
180
bigBed narrowPeak
176
bed broadPeak
175
bed bed3+
174
bigBed broadPeak
157
txt
151
fastq
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1414
Homo sapiens
Biosample type
1415
tissue
807
primary cell
195
in vitro differentiated cells
178
cell line
7
stem cell
Organ
473
connective tissue
adipose tissue
388
pancreas
272
kidney
190
heart
166
liver
158
bone element
60
blood vessel
60
vasculature
56
brain
56
limb
54
eye
53
musculature of body
45
artery
20
lung
18
ureter
16
skeleton
15
epithelium
8
nerve
5
spleen
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1320
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
865
GRCh38
801
hg19
Lab
1143
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
9
audit script error
assay_slims!
DNA binding
lab.title!
Karen Mohlke, UNC
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
1415 results
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total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
298
68
1
7
4
3
1
1
4
kidney
49
75
13
64
6
1
1
1
liver
147
2
1
1
3
1
1
1
bone element
84
bone tissue
58
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