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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
total RNA-seq
STARR-seq
3
Hi-C
1
ATAC-seq
1
whole genome sequencing assay
Assay category
DNA binding
10
Transcription
3
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Date released
13
August, 2021
2
March, 2019
Available data
10
tsv
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
15
Homo sapiens
Biosample type
11
cell line
4
tissue
Organ
11
liver
4
pancreas
Project
15
AMP
Genome assembly (visualization)
3
hg19
1
GRCh38
Lab
2253
AMP-T2D consortium
324
Klaus Kaestner, Upenn
189
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
15
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
assay_slims!
DNA binding
assay_title!
STARR-seq
BIOSAMPLE
ASSAY
15 results
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total RNA-seq
Hi-C
ATAC-seq
whole genome sequencing assay
cell line
HepG2
9
1
1
tissue
islet of Langerhans
1
2
1
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