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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ATAC-seq
17
total RNA-seq
10
snATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
pCHi-C
Assay category
44
DNA accessibility
DNA binding
17
Transcription
Date released
24
May, 2022
23
February, 2023
12
May, 2021
8
January, 2021
Available data
24
bam
24
fastq
18
bed narrowPeak
6
txt
5
bigWig
Organism
67
Homo sapiens
Biosample type
primary cell
52
tissue
10
in vitro differentiated cells
5
cell line
Organ
51
pancreas
1
thymus
Project
35
AMP
32
T1D
Genome assembly (visualization)
23
hg19
Lab
1891
AMP-T2D consortium
142
Katalin Susztak, Upenn
67
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
20
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
assay_slims!
DNA binding
biosample_type!
primary cell
BIOSAMPLE
ASSAY
67 results
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ATAC-seq
total RNA-seq
snATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
pCHi-C
tissue
islet of Langerhans
29
11
6
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
5
5
cell line
EndoC_BH1
3
2
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