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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
total RNA-seq
38
ATAC-seq
4
GRO-seq
4
Hi-C
4
pCHi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
DNA binding
138
Transcription
39
DNA accessibility
4
3D chromatin structure
Date released
89
May, 2021
26
February, 2021
19
August, 2021
15
February, 2018
12
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2017
August, 2018
Available data
145
bam
144
bigWig
131
tsv
22
bed narrowPeak
20
fastq
7
bed bedgraph
bed bed3+
6
bedpe bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
189
Homo sapiens
Biosample type
1693
tissue
772
primary cell
189
in vitro differentiated cells
175
cell line
7
stem cell
Organ
23
connective tissue
7
embryo
2
epithelium
1
heart
Project
189
AMP
Genome assembly (visualization)
172
hg19
145
GRCh38
4
hg18
Lab
174
AMP-T2D consortium
10
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
106
inconsistent ontology term
2
audit script error
assay_slims!
DNA binding
month_released!
August, 2018
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
189 results
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total RNA-seq
ATAC-seq
GRO-seq
Hi-C
pCHi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
19
1
1
neural progenitor cell
7
10
embryonic stem cell
7
6
1
adipocyte
5
7
1
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