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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
27
snATAC-seq
22
ATAC-seq
6
WGBS
3
snDrop-seq
2
pCHi-C
Assay category
Transcription
49
DNA accessibility
DNA binding
6
DNA methylation
Date released
187
June, 2019
144
February, 2021
140
May, 2022
111
February, 2023
101
May, 2020
96
August, 2021
52
May, 2021
46
March, 2020
43
July, 2019
42
October, 2019
28
November, 2019
26
August, 2017
17
November, 2018
16
January, 2021
14
September, 2018
12
November, 2020
11
May, 2023
10
April, 2020
8
January, 2018
8
October, 2017
7
August, 2020
5
March, 2019
5
September, 2017
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
December, 2018
1
March, 2023
Available data
84
txt
33
fastq
19
bam
18
bed narrowPeak
9
tsv
4
bed bedgraph
2
bed bed3
2
bed bed3+
1
bigWig
Organism
144
Homo sapiens
Biosample type
95
tissue
35
primary cell
10
cell line
4
in vitro differentiated cells
Organ
92
bone element
8
artery
8
blood vessel
8
heart
8
skeleton
8
vasculature
6
connective tissue
6
epithelium
6
limb
6
pancreas
3
kidney
2
liver
Project
111
AMP
33
HPAP
Genome assembly (visualization)
24
hg19
18
GRCh38
Lab
111
AMP-T2D consortium
33
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
27
audit script error
1
inconsistent replicate
assay_slims!
DNA binding
Transcription
month_released!
December, 2018
BIOSAMPLE
ASSAY
144 results
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RNA microarray
snATAC-seq
ATAC-seq
WGBS
snDrop-seq
pCHi-C
tissue
bone element
84
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
+ See 7 more…
primary cell
Langerhans cell
27
pancreatic alpha cell
6
osteoblast
1
1
cell line
smooth muscle cell of the coronary artery
8
HepG2
1
1
in vitro differentiated cells
adipocyte
4
See all biosamples
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