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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
501
total RNA-seq
27
snATAC-seq
22
ATAC-seq
18
single cell RNA-seq
6
WGBS
3
snDrop-seq
2
pCHi-C
Assay category
519
Transcription
49
DNA accessibility
DNA binding
6
DNA methylation
Date released
579
February, 2021
283
May, 2020
273
August, 2021
200
May, 2022
194
February, 2023
183
June, 2019
162
July, 2018
148
May, 2021
115
August, 2017
106
July, 2019
61
October, 2019
59
September, 2020
49
April, 2018
47
September, 2023
45
March, 2020
41
September, 2018
39
November, 2019
24
February, 2020
19
April, 2020
18
November, 2018
16
January, 2021
15
February, 2018
15
May, 2023
10
November, 2020
8
December, 2019
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
2
June, 2018
2
October, 2018
1
August, 2022
December, 2018
Available data
520
bam
515
tsv
502
bigWig
45
fastq
18
bed narrowPeak
6
csv
5
txt
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
579
Homo sapiens
Biosample type
461
tissue
62
cell line
48
primary cell
8
in vitro differentiated cells
Organ
455
connective tissue
386
adipose tissue
66
bone element
60
artery
60
blood vessel
60
heart
60
vasculature
8
kidney
8
skeleton
6
epithelium
6
limb
6
pancreas
3
liver
Project
534
AMP
45
HPAP
Genome assembly (visualization)
525
hg19
519
GRCh38
Lab
534
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
inconsistent ontology term
32
audit script error
1
inconsistent replicate
assay_slims!
DNA binding
month_released!
December, 2018
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
579 results
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Clear Filters
total RNA-seq
snATAC-seq
ATAC-seq
single cell RNA-seq
WGBS
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone tissue
58
kidney
5
visceral abdominal adipose tissue
3
subcutaneous adipose tissue
2
+ See 12 more…
cell line
smooth muscle cell of the coronary artery
52
8
HepG2
1
1
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
1
in vitro differentiated cells
adipocyte
4
4
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