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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
8
WGBS
7
ATAC-seq
3
DNase-seq
3
pCHi-C
3
small RNA-seq
1
RNA microarray
Assay category
401
Transcription
DNA binding
10
DNA accessibility
8
DNA methylation
Date released
386
February, 2021
12
July, 2019
7
August, 2017
4
November, 2018
2
February, 2020
2
March, 2020
2
October, 2017
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2019
1
October, 2019
Available data
410
bigWig
409
bam
402
tsv
11
fastq
8
bed narrowPeak
5
bigBed narrowPeak
4
bed bedMethyl
4
bigBed bedMethyl
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bedpe bed3+
Organism
422
Homo sapiens
Biosample type
420
tissue
2
primary cell
1
in vitro differentiated cells
Organ
728
pancreas
531
connective tissue
418
adipose tissue
395
epithelium
302
kidney
259
heart
238
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
423
AMP
Genome assembly (visualization)
410
GRCh38
409
hg19
Lab
423
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
DNA binding
month_released!
December, 2018
BIOSAMPLE
ASSAY
423 results
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total RNA-seq
WGBS
ATAC-seq
DNase-seq
pCHi-C
small RNA-seq
RNA microarray
tissue
adipose tissue
382
3
3
1
subcutaneous adipose tissue
7
1
1
1
omental fat pad
5
1
2
1
spleen
2
1
1
1
subcutaneous abdominal adipose tissue
3
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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