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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
59
total RNA-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
2
ATAC-seq
1
RNA microarray
1
whole genome sequencing assay
Assay category
165
Transcription
DNA binding
8
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Date released
200
May, 2022
187
August, 2021
170
February, 2023
144
February, 2021
103
May, 2020
56
September, 2020
48
March, 2020
48
May, 2021
47
September, 2023
41
October, 2019
29
July, 2019
February, 2020
19
April, 2020
17
August, 2017
16
January, 2021
10
November, 2020
8
January, 2018
5
December, 2019
4
July, 2018
4
March, 2023
4
October, 2022
3
March, 2019
3
May, 2023
2
November, 2018
2
November, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
September, 2018
Available data
108
tsv
57
txt
2
bed bed3+
2
bed narrowPeak
2
bedpe bed3+
2
bigWig
2
hic
1
vcf
Organism
186
Homo sapiens
Biosample type
165
tissue
18
cell line
4
in vitro differentiated cells
Organ
92
heart
66
kidney
13
liver
6
blood vessel
6
vasculature
5
connective tissue
4
pancreas
2
artery
2
epithelium
1
adipose tissue
Project
187
AMP
Genome assembly (visualization)
GRCh38
31
hg19
Lab
101
AMP-T2D consortium
64
Katalin Susztak, Upenn
18
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_slims!
DNA binding
month_released!
February, 2020
assembly!
GRCh38
BIOSAMPLE
ASSAY
187 results
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single cell RNA-seq
total RNA-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
ATAC-seq
RNA microarray
whole genome sequencing assay
tissue
kidney
8
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
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