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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
101
total RNA-seq
18
snATAC-seq
17
pCHi-C
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
101
Transcription
DNA binding
29
DNA accessibility
Date released
68
May, 2021
45
May, 2020
23
February, 2023
16
January, 2021
Available data
96
bam
96
bigWig
96
tsv
Organism
152
Homo sapiens
Biosample type
120
primary cell
27
tissue
5
cell line
Organ
26
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
152
T1D
37
AMP
Genome assembly (visualization)
96
GRCh38
96
hg19
Lab
152
Kyle Gaulton, UCSD
4
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
assay_slims!
DNA binding
month_released!
January, 2018
BIOSAMPLE
ASSAY
152 results
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total RNA-seq
snATAC-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
1
peripheral blood mononuclear cell
8
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
+ See 31 more…
tissue
islet of Langerhans
5
6
11
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
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