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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
DNase-seq
27
ATAC-seq
5
FAIRE-seq
Assay category
DNA binding
237
DNA accessibility
Date released
183
June, 2019
14
September, 2018
12
October, 2019
10
August, 2017
10
November, 2018
5
September, 2017
2
July, 2019
1
November, 2020
Available data
1810
bam
1767
bigWig
1595
tsv
496
fastq
461
bed narrowPeak
237
bigBed narrowPeak
216
bed bed3+
204
bed broadPeak
202
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
2
ibed
1
bedpe
1
tar
1
vcf
Organism
237
Homo sapiens
Biosample type
181
tissue
51
primary cell
3
in vitro differentiated cells
2
cell line
Organ
80
kidney
40
epithelium
36
limb
33
brain
33
musculature of body
32
pancreas
30
heart
18
ureter
13
connective tissue
12
vasculature
10
blood vessel
6
liver
4
adipose tissue
4
artery
eye
3
vein
2
nerve
1
spleen
Project
237
AMP
Genome assembly (visualization)
227
GRCh38
214
hg19
Lab
237
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
assay_slims!
DNA binding
month_released!
January, 2018
organ_slims!
eye
BIOSAMPLE
ASSAY
237 results
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Clear Filters
DNase-seq
ATAC-seq
FAIRE-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
1
muscle of leg
13
+ See 41 more…
primary cell
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
pancreatic ductal cell
4
cardiac fibroblast
3
+ See 21 more…
in vitro differentiated cells
adipocyte
1
2
cell line
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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