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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
164
total RNA-seq
109
ATAC-seq
24
snATAC-seq
17
pCHi-C
11
single cell RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
Hi-C
Assay category
175
Transcription
DNA binding
133
DNA accessibility
1
3D chromatin structure
Date released
128
August, 2021
81
May, 2021
45
May, 2020
24
May, 2022
23
February, 2023
16
January, 2021
14
May, 2023
Available data
120
bam
103
bigWig
96
tsv
82
bed narrowPeak
64
xls
63
txt
24
fastq
2
bed bed3+
1
hic
Organism
331
Homo sapiens
Biosample type
194
tissue
122
primary cell
10
in vitro differentiated cells
5
cell line
Organ
142
kidney
51
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
179
AMP
152
T1D
Genome assembly (visualization)
171
GRCh38
122
hg19
Lab
2245
AMP-T2D consortium
324
Klaus Kaestner, Upenn
189
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
20
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
assay_slims!
DNA binding
month_released!
January, 2018
BIOSAMPLE
ASSAY
331 results
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total RNA-seq
ATAC-seq
snATAC-seq
pCHi-C
single cell RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
Hi-C
tissue
kidney
49
75
6
11
1
islet of Langerhans
11
29
6
pancreas
1
4
thymus
1
primary cell
monocyte
53
1
peripheral blood mononuclear cell
8
CD8-positive, alpha-beta T cell
4
1
B cell
2
1
naive B cel
2
1
+ See 31 more…
in vitro differentiated cells
embryonic stem cell
5
5
cell line
EndoC_BH1
3
2
See all biosamples
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