Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
108
total RNA-seq
29
ATAC-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
3
MeRIP-seq
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
DNA binding
110
Transcription
31
DNA accessibility
4
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
3
control
nucleotide modification
Date released
88
February, 2021
26
August, 2021
20
May, 2021
10
March, 2020
7
October, 2019
6
February, 2023
January, 2019
3
November, 2019
3
November, 2020
2
March, 2023
1
December, 2018
1
January, 2018
1
May, 2020
1
November, 2018
1
October, 2022
Available data
114
tsv
112
bam
106
bigWig
12
bed narrowPeak
3
bed bed3+
2
bedpe bed3+
2
bigBed narrowPeak
2
fastq
2
hic
1
bed bed3
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
1
hdf5
1
txt
1
vcf
Organism
166
Homo sapiens
Biosample type
1868
tissue
809
primary cell
196
in vitro differentiated cells
170
cell line
7
stem cell
Organ
61
epithelium
61
pancreas
60
artery
60
blood vessel
60
heart
60
vasculature
18
liver
9
kidney
8
embryo
1
blood
1
bodily fluid
1
mammary gland
Project
161
AMP
7
T1D
2
community
Genome assembly (visualization)
118
hg19
113
GRCh38
Lab
144
AMP-T2D consortium
16
Bing Ren, UCSD
5
Kyle Gaulton, UCSD
3
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
Audit category:
64
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
inconsistent assembly
assay_slims!
DNA binding
month_released!
January, 2019
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
170 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
pCHi-C
STARR-seq
Hi-C
CRISPR genome editing followed by DNA sequencing
MeRIP-seq
Capture-C
DNase-seq
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
WGBS
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
EndoC_BH1
33
19
1
3
3
2
2
1
smooth muscle cell of the coronary artery
52
8
HepG2
9
1
2
2
2
1
1
H1-hESC
8
EndoC-BH1
1
1
+ See 13 more…
See all biosamples
Download