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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
total RNA-seq
5
STARR-seq
3
Hi-C
ATAC-seq
1
whole genome sequencing assay
Assay category
DNA binding
10
Transcription
3
3D chromatin structure
1
DNA sequencing
Date released
18
August, 2021
1
March, 2019
Available data
10
tsv
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
19
Homo sapiens
Biosample type
16
cell line
3
tissue
Organ
13
liver
3
pancreas
2
kidney
Project
19
AMP
Genome assembly (visualization)
2
hg19
Lab
1853
AMP-T2D consortium
275
Klaus Kaestner, Upenn
155
Kyle Gaulton, UCSD
67
Katalin Susztak, Upenn
47
KPMP
20
Karen Mohlke, UNC
19
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
Audit category:
1
inconsistent ontology term
assay_slims!
DNA binding
month_released!
March, 2020
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
19 results
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total RNA-seq
STARR-seq
Hi-C
whole genome sequencing assay
cell line
HepG2
9
2
1
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
1
2
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